It's just you say there is 3 things, 1,judder and 2, vibration could be fueling issues for sure, though injector wise I would guess the vibration would be more obvious, particularly at lower revs. Its thing 3, the noise. That's what's throwing me, unless there are actually two issues??
If the noise is caused by a pump chain I don't see how that would cause the physical symptoms. Head scratcher.
If it is two separate issues, then the judder could also be coming from a drive shaft. Typically if the inner joint has wear you will get vibrations that are more speed specific but they are exaggerated on acceleration till a certain speed and then it goes away. They wear at a specific point on the shaft when at temperature. So, when cold the bearings are not in their usual place. When warm they reach said place and can wear the shaft. So the bearings lock into the wear marks and that creates a judder at certain speeds.
what does it behave like on harder acceleration? In each gear?